rs1871893 chr17:35185974 G>A
- Sequence
gacagtgtcatctgatttgctttt[G/A]gtgaaggtcttgtgctgtgtcata
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocyte-derived dendritic cells
- ASB for transcription factors
- TBX21_HUMAN MEF2B_HUMAN SPI1_HUMAN MTA2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -3.00 | 3.38 | 1.00 | n/a | No Hit | |||
| MEF2B_HUMAN | -1.50 | 1.50 | 1.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.40 | 1.34 | 2.84 | n/a | No Hit | |||
| MTA2_HUMAN | -1.57 | 1.88 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood