rs1872182 chr5:180831113 C>T
- Sequence
ggctttgggctgtggaaacgctgc[C/T]tctgtggaagtctctcctcgcggg
- ASB in cell types
- HCT-116 (colon carcinoma) primary B-CLL cells BEAS-2B (bronchial epithelium) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- ZFX_HUMAN BRD4_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.27 | -0.73 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 2.19 | -0.21 | 1.67 | n/a | n/a | |||
| GCR_HUMAN | 0.37 | 1.31 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood