rs1872772 chr11:63888374 C>T
- Sequence
tgcccctacccaggtcccacctgc[C/T]acaggtgagctagggttttatgac
- ASB in cell types
- TMD8 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | n/a | 2.62 | 2.00 | 1.59 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, diastolic blood pressure (dbp), hdl cholesterol change with statins, major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), major depressive disorder (narrow definition) (males), systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood