rs1873422 chr5:172115017 C>T
- Sequence
tacttcccctctgctgggcctgtg[C/T]gattctcacaggctgggcagggta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocyte-derived dendritic cells GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- TRI22_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TRI22_HUMAN | -1.14 | 2.29 | 1.00 | n/a | n/a | |||
| RAD51_HUMAN | -0.66 | 0.66 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis