rs1873612 chr12:40158649 C>G
- Sequence
agcacctctcagttccacttctta[C/G]tcaagaagttcctcttcttgctca
- ASB in cell types
- SUM159PT (Triple negative breast cancer) THP-1 (acute monocytic leukemia) macrophages form periferal blood
- ASB for transcription factors
- CEBPB_HUMAN SPI1_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.47 | -0.21 | 1.50 | -2.57 | Concordant | |||
| SPI1_HUMAN | 1.24 | 0.32 | 1.39 | -1.62 | Weak Concordant | |||
| CEBPA_HUMAN | 1.41 | -0.48 | 1.07 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), fasting insulin, hdl cholesterol change with statins, homa-ir, microalbuminuria, rheumatoid arthritis, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood