rs1873796 chr1:172647499 C>T
- Sequence
cctcactgtcctgcaggtgatggt[C/T]cctttagccttaggcacttggggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02255 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.06 | 1.45 | 1.30 | -1.03 | Weak Discordant |
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Motif analysis
