rs1874252 chr15:38670555 G>T
- Sequence
tctattggtcaaaataactacaag[G/T]ccagcccagattcaagagaagggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.63 | -2.67 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP acute interstitial lung disease in gefitinib-treated non-small cell lung cancer, ldl cholesterol, neuroblastoma (brain cancer), premature ovarian failure, total cholesterol