rs1874774 chr1:55277624 T>G
- Sequence
atgtgtgtgtgagatgatcttcgc[T/G]ctctgactctggatcttatatcgc
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) CD34+ stem cells-derived erythroblasts GM10847 (female B-cells Lymphoblastoid Cell Lines) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SCRT1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.79 | 1.41 | n/a | No Hit | |||
| STAG1_HUMAN | 0.58 | 0.20 | 1.00 | n/a | n/a | |||
| SCRT1_HUMAN | n/a | 2.48 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | -0.19 | 2.06 | 2.00 | n/a | No Hit |
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