rs1876220 chr18:8800549 G>A
- Sequence
ccctgtttccctgtcttcagccac[G/A]tgagctcgcagtcatgacctgggc
- ASB in cell types
- A549 (lung carcinoma) MDA-MB-231 (breast adenocarcinoma) SYO-1(Biphasic synovial sarcoma) sigmoid colon
- ASB for transcription factors
- USF2_HUMAN JUN_HUMAN BRD4_HUMAN EP300_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF2_HUMAN | 2.73 | -2.47 | 1.00 | -2.39 | Concordant | |||
| JUN_HUMAN | 1.63 | -0.52 | 1.71 | n/a | No Hit | |||
| BRD4_HUMAN | 1.44 | -0.62 | 2.00 | n/a | n/a | |||
| EP300_HUMAN | 2.19 | 0.34 | 1.33 | n/a | n/a | |||
| SSXT_HUMAN | 1.00 | 2.57 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Nerve_Tibial, Testis