rs1876294 chr15:90048239 C>T
- Sequence
tgcctgggaaagctttgtaaactg[C/T]agagggctgtagctgtgtgagcag
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.91 | -0.91 | 2.00 | -0.29 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, amyotrophic lateral sclerosis (als), eye color, height, mitral annular calcium, schizophrenia, sporadic creutzfeldt-jakob disease, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Esophagus_Mucosa, Lung, Nerve_Tibial, Thyroid, Whole_Blood