rs1876654 chr5:41870573 T>C
- Sequence
ccccggcggggagaagaggctctg[T/C]gcagccggggcggatcgcggggaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SRBP2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 1.71 | -1.19 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.33 | -1.05 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid