rs1876834 chr4:48341676 G>A
- Sequence
gcggcggcgacgcctctttcctcc[G/A]tctctttccctgtcgctgcgagag
- ASB in cell types
- K562 (myelogenous leukemia) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes
- ASB for transcription factors
- TYY1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.28 | 3.51 | 1.50 | 4.33 | Concordant | |||
| ESR1_HUMAN | 1.61 | -0.73 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Testis