rs1877199 chr15:85169040 C>T

Sequence
ctgggaagatgaaaataatgacat[C/T]gccccccagtggaggagtgtggga
ASB in cell types
HEK293 (embryonic kidney) A549 (lung carcinoma) glioblastoma cells SUM159PT (Triple negative breast cancer)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.95 0.85 4.9·10-71.00 1.27 -1.29 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP acute lung injury following major trauma,  hdl cholesterol,  microalbuminuria,  obesity with early age of onset (age >2),  refractive error,  waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid

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