rs1877993 chr10:77613689 C>T

Sequence
ccgacaggatgtttgcgttcaagc[C/T]aaaactgcctcctctatccaactt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -0.41 1.82 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  rheumatoid arthritis
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Lung,  Whole_Blood

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