rs1878086 chr2:195534243 C>T
- Sequence
cagcattcgcaaacccctccctgg[C/T]gactcatcgacacacagaagggtc
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) BEAS-2B (bronchial epithelium) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.76 | 2.56 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | -4.10 | 4.28 | 1.00 | 6.66 | Concordant |
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Motif analysis
