rs1887026 chr10:6163933 G>C
- Sequence
cctacgctctggggacctggggtt[G/C]tgtttccggcaaaggatgttttcc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN GABP1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.24 | n/a | 2.00 | 4.23 | Discordant | |||
| GABP1_HUMAN | n/a | 1.17 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | -3.73 | 1.88 | 2.00 | 0.27 | Weak Concordant |
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Motif analysis
