rs189576 chr18:35497696 A>G
- Sequence
tcccgtttcgcgacgcgcacgcgc[A/G]gcctgggagcgcgactgcgtacct
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- TYY1_HUMAN NRF1_HUMAN STAT1_HUMAN TAF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.13 | 3.33 | 1.67 | n/a | No Hit | |||
| NRF1_HUMAN | 1.39 | 0.23 | 1.64 | -2.66 | Concordant | |||
| STAT1_HUMAN | 1.72 | 0.56 | 1.75 | n/a | No Hit | |||
| TAF7_HUMAN | -5.32 | 3.14 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood