rs189899 chr17:46923163 G>C

Sequence
aggacgtgttccgaggaagccaga[G/C]ccggagccgtggcctgcggggccg
ASB in cell types
HEK293T (embryonic kidney) T-cells liver SK-N-SH (neuroblastoma)
ASB for transcription factors
ZFX_HUMAN ZBT11_HUMAN GABPA_HUMAN RAG2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN n/a 2.22 1.006.7·10-7 2.00 n/a No Hit
ZBT11_HUMAN n/a 0.65 1.001.8·10-4 2.00 n/a n/a
GABPA_HUMAN 1.75 -0.29 6.9·10-41.00 1.62 n/a No Hit
RAG2_HUMAN 2.93 -2.72 3.0·10-31.00 1.00 n/a n/a
ZN366_HUMAN -1.48 1.73 1.000.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP college completion,  cystatin c in serum,  hdl cholesterol,  ldl cholesterol,  parkinsons disease,  systolic blood pressure (sbp),  total cholesterol,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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