ADASTRA v6.1.0
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rs19039
chr11:86292003
A
>
G
Sequence
accccctgctggagagttggcaaa[A/G]ttctgtgacattggtcaatttagt
ASB in cell types
HeLa (cervical adenocarcinoma)
erythroid progenitors
GM12878 (female B-cells lymphoblastoid cell line)
HeLa S3 (cervical adenocarcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.49
1.07
1.00
1.3·10
-15
1.43
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
comorbid depressive syndrome and alcohol dependence
,
hdl cholesterol
,
total cholesterol
,
urinary albumin-to-creatinine ratio
GTEx eQTL
Artery_Tibial
,
Brain_Cerebellum
,
Cells_Cultured_fibroblasts
,
Heart_Left_Ventricle
,
Liver
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)