rs193346 chr5:119427804 G>A
- Sequence
ggcaattttcctaactctgcttct[G/A]caagagtttccttatcacttaccc
- ASB in cell types
- CD14+ monocytes MOLM-13(acute monocytic leukemia(AML), Homo sapiens)
- ASB for transcription factors
- STAT1_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.27 | -0.31 | 2.00 | n/a | No Hit | |||
| CEBPA_HUMAN | 2.36 | -0.79 | 1.50 | -3.53 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Liver, Nerve_Tibial, Prostate, Spleen, Stomach, Thyroid