rs193536 chr16:14300987 C>T
- Sequence
aagttgggtggtgtgttttatgag[C/T]gtgacctgtgttggccaacagagg
- ASB in cell types
- K562 (myelogenous leukemia) GSC23 (Glioblastoma) GM19099 (female B-cells Lymphoblastoid Cell Lines) thoracic aorta
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.61 | 1.16 | 1.43 | 0.41 | Weak Concordant | |||
| STAG1_HUMAN | -0.10 | 0.61 | 1.20 | n/a | n/a | |||
| SMC3_HUMAN | -0.00 | 1.90 | 1.50 | n/a | n/a | |||
| RAD21_HUMAN | 0.38 | 0.92 | 1.43 | n/a | n/a | |||
| FOXK2_HUMAN | 2.45 | 0.45 | 1.88 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
