rs1937 chr10:58385582 G>C

Sequence
tccgaagcatgtggggcgtgctga[G/C]tgccctgggaaggtctggagcaga
ASB in cell types
primary B-CLL cells breast tumor
ASB for transcription factors
ESR1_HUMAN ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.92 -0.12 6.8·10-31.00 2.00 2.36 Discordant
ZFX_HUMAN -1.01 1.49 1.000.02 1.00 n/a No Hit
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Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

GRASP triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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