rs194606 chr6:81821650 T>G
- Sequence
gaaaaggggaaatcccagttctat[T/G]ctaggcacatttgcacatacctaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN TBX21_HUMAN ATF7_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.87 | -3.66 | 1.00 | -5.66 | Concordant | |||
| TBX21_HUMAN | 2.45 | n/a | 1.50 | n/a | No Hit | |||
| ATF7_HUMAN | 2.77 | -4.84 | 1.50 | n/a | No Hit | |||
| COT1_HUMAN | 2.17 | n/a | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 1.90 | -0.44 | 1.50 | n/a | n/a |
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Motif analysis
