rs196322 chr10:119668006 G>A
- Sequence
ggctccctgtcagggccatctcac[G/A]gcaggaattcagctctgaatgtga
- ASB in cell types
- Ishikawa (endometrial adenocarcinoma) HCT-116 (colon carcinoma) BEAS-2B (bronchial epithelium) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ESR1_HUMAN GCR_HUMAN JUN_HUMAN TEAD3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.22 | 2.25 | 2.15 | n/a | No Hit | |||
| GCR_HUMAN | 1.23 | 1.19 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.24 | 0.43 | 2.00 | n/a | No Hit | |||
| TEAD3_HUMAN | 2.25 | -1.83 | 1.00 | -2.02 | Concordant |
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Motif analysis
