rs196933 chr17:64056696 G>A

Sequence
gagccaccaacccaccagggagtc[G/A]tctcttcttctctccaccatgggg
ASB in cell types
GM19240 (B cells Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 1.12 -0.47 0.021.00 1.00 n/a n/a
CTCF_HUMAN 0.95 0.36 0.031.00 1.18 -0.84 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP bipolar disorder ldl cholesterol neuroticism rheumatoid arthritis total cholesterol waist hip ratio
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Brain_Cerebellar_Hemisphere Brain_Cerebellum Cells_Cultured_fibroblasts Lung Minor_Salivary_Gland Nerve_Tibial Small_Intestine_Terminal_Ileum Spleen Thyroid Whole_Blood

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