ADASTRA v6.1.0
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rs196933
chr17:64056696
G
>
A
Sequence
gagccaccaacccaccagggagtc[G/A]tctcttcttctctccaccatgggg
ASB in cell types
GM19240 (B cells Lymphoblastoid Cell Lines)
GM18526 (B – cells Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN
1.12
-0.47
0.02
1.00
1.00
n/a
n/a
CTCF_HUMAN
0.95
0.36
0.03
1.00
1.18
-0.84
Weak Concordant
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5
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Motif analysis
CTCF_HUMAN
Weak Concordant
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Genetic associations
GRASP
bipolar disorder
,
ldl cholesterol
,
neuroticism
,
rheumatoid arthritis
,
total cholesterol
,
waist hip ratio
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Cells_Cultured_fibroblasts
,
Lung
,
Minor_Salivary_Gland
,
Nerve_Tibial
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
Go to motif analysis