rs196933 chr17:64056696 G>A
- Sequence
gagccaccaacccaccagggagtc[G/A]tctcttcttctctccaccatgggg
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.12 | -0.47 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.95 | 0.36 | 1.18 | -0.84 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, ldl cholesterol, neuroticism, rheumatoid arthritis, total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Lung, Minor_Salivary_Gland, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Whole_Blood