rs197227 chr4:109596541 T>G
- Sequence
gatgatctcaatgtggaactgcag[T/G]tgccatccacagtcccttctcatt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN REQU_HUMAN KDM1A_HUMAN ZN316_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 2.46 | n/a | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 3.40 | n/a | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.73 | -1.65 | 2.00 | n/a | n/a | |||
| ZN316_HUMAN | 3.02 | n/a | 2.00 | n/a | No Hit | |||
| MEIS2_HUMAN | 3.01 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 10
Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), hdl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid