rs197391 chr1:111755544 G>C
- Sequence
aacggaaaacggaagcacgagacg[G/C]gggcgtgacgcaccgggcgcatca
- ASB in cell types
- HEK293 (embryonic kidney) MOLT-4 (Adult T acute lymphoblastic leukemia) breast tumor
- ASB for transcription factors
- CREB1_HUMAN ZN629_HUMAN ZBT8A_HUMAN ZBT21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -0.68 | 2.53 | 1.00 | n/a | No Hit | |||
| ZN629_HUMAN | n/a | 1.58 | 2.00 | n/a | n/a | |||
| ZBT8A_HUMAN | n/a | 0.58 | 2.00 | n/a | n/a | |||
| ZBT21_HUMAN | n/a | 2.24 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.06 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood