rs1974122 chr1:16727269 C>A
- Sequence
tactcttttctcttatcccccagg[C/A]cgtgggtgtgtagaggccttggtg
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP (prostate carcinoma) A549 (lung carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- TBP_HUMAN PRDM9_HUMAN SRBP2_HUMAN ZNF34_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 1.61 | n/a | 2.00 | n/a | No Hit | |||
| PRDM9_HUMAN | 3.02 | n/a | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.79 | 3.69 | 2.50 | 3.17 | Concordant | |||
| ZNF34_HUMAN | 3.21 | n/a | 2.00 | n/a | No Hit | |||
| ZN184_HUMAN | 3.05 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
