rs1981254 chr1:84408152 A>G

Sequence
tgcttaatcagaaacttggttcca[A/G]aacaaccaagagaaataggaacat
ASB in cell types
LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN TBP_HUMAN ANDR_HUMAN A2NVP9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.70 0.33 1.8·10-131.00 1.62 n/a No Hit
TBP_HUMAN 2.06 -0.28 1.1·10-51.00 1.00 n/a No Hit
ANDR_HUMAN 1.13 0.61 9.4·10-51.00 1.60 n/a No Hit
A2NVP9_HUMAN 1.96 -1.17 1.6·10-41.00 1.50 n/a n/a
Items per page:
1 – 4 of 4

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Esophagus_Mucosa,  Minor_Salivary_Gland,  Muscle_Skeletal,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Stomach

Download