rs198612 chr13:48402719 A>G

Sequence
gtcctttgctttatttttctttaa[A/G]tgcaggtccattttttcccctcgt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -3.50 3.32 1.002.1·10-4 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol partial epilepsy serum creatinine total cholesterol
GTEx eQTL Adipose_Visceral_Omentum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Muscle_Skeletal Thyroid

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