rs198852 chr6:26104220 A>G

Sequence
agccatggatgtagtatatgccct[A/G]aaacgtcaggggcgcactctgtat
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney) CD4+ T-cells
ASB for transcription factors
TYY1_HUMAN ARID2_HUMAN GCR_HUMAN BCL6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 3.17 n/a 6.9·10-41.00 2.00 n/a No Hit
ARID2_HUMAN 2.92 0.57 0.020.65 1.67 n/a n/a
GCR_HUMAN 0.39 0.66 1.000.03 1.18 n/a No Hit
BCL6_HUMAN 2.24 -0.21 0.031.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP autism,  comorbid depressive syndrome and alcohol dependence,  height,  serum urate
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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