rs2001216 chr15:90954900 T>C
- Sequence
taaaagctgcttcctgttggggca[T/C]gagtccggcgcgtgtcgggttttg
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes 22RV1 (prostate carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- HES1_HUMAN STAT1_HUMAN DMAP1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HES1_HUMAN | -3.00 | 3.33 | 1.00 | 4.21 | Concordant | |||
| STAT1_HUMAN | 2.03 | -0.55 | 2.00 | n/a | No Hit | |||
| DMAP1_HUMAN | -2.57 | 2.79 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.71 | -1.91 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.79 | 0.32 | 1.17 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood