rs2003421 chr1:16644289 G>T
- Sequence
tagttgaagatctgattaaatgca[G/T]tcattcatttgatgagcagacctt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN GABP1_HUMAN KDM1A_HUMAN KAISO_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.00 | 0.36 | 2.40 | n/a | No Hit | |||
| GABP1_HUMAN | 1.89 | n/a | 1.75 | n/a | n/a | |||
| KDM1A_HUMAN | 1.30 | n/a | 2.67 | n/a | n/a | |||
| KAISO_HUMAN | 2.47 | -0.45 | 1.50 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.50 | -0.62 | 2.33 | n/a | n/a |
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Motif analysis
