rs200550501 chr17:80024520 A>G
- Sequence
acacgcaccatagacaaaccacgc[A/G]caccatgcacacaccacacaccat
- ASB in cell types
- HT1080 (fibrosarcoma) HEK293 (embryonic kidney) IMR90 (lung fibroblasts) pancreas
- ASB for transcription factors
- SSRP1_HUMAN HIRA_HUMAN AEBP2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSRP1_HUMAN | 1.31 | -0.60 | 1.36 | n/a | n/a | |||
| HIRA_HUMAN | 1.93 | -1.98 | 1.00 | n/a | n/a | |||
| AEBP2_HUMAN | 2.75 | -2.55 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.38 | 0.40 | 1.67 | n/a | No Hit |
Items per page:
1 – 4 of 4