ADASTRA v6.1.0
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rs201004
chr6:27837156
T
>
C
Sequence
aacagagtattacactctcggggg[T/C]gggagagagcggactgacctctgc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN
2.47
n/a
1.4·10
-3
1.00
3.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
acute lung injury following major trauma
,
bipolar disorder
,
comorbid depressive syndrome and alcohol dependence
,
height
,
infant head circumference
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Brain_Spinal_cord_cervical_c-1
,
Brain_Substantia_nigra
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Whole_Blood
Download
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)