rs201745805 chr10:38526893 T>G
- Sequence
ggaatggtgtggaatggaagggat[T/G]cgaatggaatggagtggattggac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN T22D4_HUMAN PRDM4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.43 | 0.23 | 1.86 | n/a | No Hit | |||
| STAT1_HUMAN | 2.63 | -4.96 | 2.00 | n/a | No Hit | |||
| T22D4_HUMAN | 3.32 | n/a | 2.00 | n/a | n/a | |||
| PRDM4_HUMAN | 2.99 | n/a | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.89 | -0.99 | 3.00 | n/a | No Hit |
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