rs202647 chr22:41404114 T>C
- Sequence
actcagccgccgcccctcctgccc[T/C]ccaatggctactggcatacgtggt
- ASB in cell types
- GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.77 | -0.22 | 1.00 | 0.81 | Weak Discordant | |||
| STAG1_HUMAN | 0.53 | -0.53 | 1.00 | n/a | n/a |
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Motif analysis
