rs203877 chr6:28080846 T>C
- Sequence
agacccaggaaggattcttggaat[T/C]gtagtccaaaggcatcccgccttc
- ASB in cell types
- HepG2 (hepatoblastoma) GM19240 (B cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN CREB1_HUMAN GABPA_HUMAN ATF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.51 | -0.16 | 1.10 | n/a | n/a | |||
| CREB1_HUMAN | 2.05 | -0.12 | 1.68 | n/a | No Hit | |||
| GABPA_HUMAN | 1.16 | 0.64 | 1.79 | n/a | No Hit | |||
| ATF1_HUMAN | 2.60 | -0.20 | 2.00 | n/a | No Hit | |||
| CREM_HUMAN | 2.40 | -0.09 | 1.50 | -7.64 | Concordant |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, coronary artery disease (cad), lp-pla2 activity, obesity with early age of onset (age >2), rheumatoid arthritis, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood