rs204467 chr19:44987916 A>G

Sequence
ccgtctcttctgtctttgtgagtc[A/G]ccctcctctctctccccatctgcc
ASB for transcription factors
PPARG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PPARG_HUMAN 1.67 -0.52 0.021.00 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  height,  homa-b,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis

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