rs205499 chr17:56895040 G>A

Sequence
gacgcccggtgaaggccggtgacc[G/A]caatcgccctgccttctctgcaga
ASB in cell types
HT1080 (fibrosarcoma)
ASB for transcription factors
SSRP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSRP1_HUMAN 0.83 2.24 0.560.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  birth weight,  hdl cholesterol,  height,  homa-ir,  longevity (exceptional longevity),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Muscle_Skeletal

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