rs2059991 chr3:149387062 C>T
- Sequence
catagtctctgactggctttgatg[C/T]gggagaactgaagtccaaataagc
- ASB in cell types
- HepG2 (hepatoblastoma) liver EA.hy 926 (human umbilical vein endothelial cell line) Detroit 562 (Pharyngeal squamous cell carcinoma)
- ASB for transcription factors
- HNF4A_HUMAN HIF1A_HUMAN COT2_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -0.27 | 2.57 | 1.17 | n/a | No Hit | |||
| HIF1A_HUMAN | -2.06 | 3.19 | 2.00 | n/a | No Hit | |||
| COT2_HUMAN | -1.26 | 2.26 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -1.02 | 1.15 | 1.42 | n/a | No Hit | |||
| TBX3_HUMAN | 0.44 | 1.55 | 1.00 | n/a | No Hit |
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