rs2092698 chr1:93850854 G>C
- Sequence
agtagcaggtgtttttcctggaca[G/C]cgacgctaccgctagaccatggtc
- ASB in cell types
- LNCaP (prostate carcinoma) foreskin keratinocyte keratinocytes LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN REST_HUMAN SNAI2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.47 | 0.19 | 1.23 | n/a | No Hit | |||
| REST_HUMAN | 2.48 | n/a | 2.00 | -3.43 | Concordant | |||
| SNAI2_HUMAN | 1.63 | -1.05 | 1.50 | n/a | No Hit | |||
| RAD21_HUMAN | 1.44 | -1.10 | 1.81 | n/a | n/a | |||
| STAG1_HUMAN | 1.56 | 1.01 | 1.39 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood