rs209607 chr1:40450546 T>C

Sequence
tttgtgggctgtgtctgcccaccg[T/C]ctccgtgtatcttttggaaacatt
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney)
ASB for transcription factors
MNT_HUMAN HDAC1_HUMAN SPT5H_HUMAN MTA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MNT_HUMAN -1.34 2.23 1.002.3·10-4 1.00 n/a No Hit
HDAC1_HUMAN -0.10 2.33 1.007.5·10-4 1.00 n/a n/a
SPT5H_HUMAN -2.69 2.77 1.004.3·10-3 1.00 n/a n/a
MTA3_HUMAN n/a 3.07 1.004.5·10-3 1.00 n/a n/a
TAF9B_HUMAN -2.55 2.79 1.000.01 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  intracranial aneurysm,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Testis

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