rs2097986 chr17:12859698 G>C

Sequence
tttggagcaggtataatacacaca[G/C]atgcaaaaacgattgccaggaagg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN ARNT_HUMAN MEF2B_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -1.62 1.98 1.001.3·10-3 1.00 n/a n/a
ARNT_HUMAN -2.38 2.78 1.002.3·10-3 1.00 n/a No Hit
MEF2B_HUMAN -1.86 2.24 1.006.6·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP homa-b,  obesity with early age of onset (age >2),  triglycerides change with statins
GTEx eQTL Cells_EBV-transformed_lymphocytes

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