rs2100238 chr3:161340267 T>A
- Sequence
atgtttacacattgttggtgggaa[T/A]gtaaatgagttcagtctctgtgga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GCR_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.05 | 1.95 | 1.82 | 0.25 | Weak Concordant | |||
| ESR1_HUMAN | -0.27 | 1.68 | 2.39 | n/a | No Hit | |||
| GCR_HUMAN | -5.41 | 3.23 | 2.00 | n/a | No Hit | |||
| GATA3_HUMAN | -0.23 | 2.03 | 3.33 | n/a | No Hit | |||
| P66B_HUMAN | -0.33 | 2.93 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus