rs2100820 chr11:26277029 G>T
- Sequence
cggtaagcttgccctctagtggct[G/T]ccattcatattgcactgcaggaat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) esophagus squamous epithelium A549 (lung carcinoma) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN SMCA5_HUMAN TRI22_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.98 | 0.57 | 1.30 | -1.54 | Weak Concordant | |||
| SMCA5_HUMAN | 3.09 | -3.23 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | 1.87 | -1.24 | 1.00 | n/a | n/a |
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Motif analysis
