rs2101576 chr1:4267575 C>T
- Sequence
ttcactcgctgtctttgttcttaa[C/T]ggaagctgcttctctcacttctct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MEF2B_HUMAN SMCA4_HUMAN BHE40_HUMAN ETS1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.83 | n/a | 1.33 | n/a | No Hit | |||
| SMCA4_HUMAN | 2.52 | -1.87 | 1.00 | n/a | n/a | |||
| BHE40_HUMAN | 2.84 | n/a | 1.50 | n/a | No Hit | |||
| ETS1_HUMAN | 3.64 | -3.43 | 1.00 | -3.46 | Concordant | |||
| IKZF2_HUMAN | 3.56 | -3.44 | 1.00 | n/a | n/a |
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Motif analysis
