rs2104119 chr6:152875842 G>A
- Sequence
aatcccagcactttgggaggcaga[G/A]gcgggcggatcacgaggtcaggag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- E2F1_HUMAN SPT5H_HUMAN MITF_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | -0.15 | 3.66 | 1.00 | -1.95 | Weak Discordant | |||
| SPT5H_HUMAN | -2.00 | 2.28 | 1.00 | n/a | n/a | |||
| MITF_HUMAN | -2.16 | 2.55 | 1.00 | n/a | No Hit | |||
| TIF1B_HUMAN | -2.76 | 2.85 | 1.00 | n/a | n/a | |||
| ZNF24_HUMAN | -0.21 | 2.14 | 1.20 | n/a | No Hit |
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Motif analysis
