rs2105288 chr9:121483157 A>G
- Sequence
ctctctcttttatctcaatggatc[A/G]tcacaatcacctgtgaagtggtag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor xenograft breast tumor MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN ESR1_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.87 | -0.23 | 1.58 | n/a | No Hit | |||
| GATA3_HUMAN | 2.22 | n/a | 1.75 | n/a | No Hit | |||
| ESR1_HUMAN | 1.40 | -0.25 | 1.71 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.46 | -0.34 | 1.94 | n/a | No Hit | |||
| FOS_HUMAN | 1.13 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Spinal_cord_cervical_c-1, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood