rs2105454 chr6:6851305 A>G
- Sequence
tcagcatctcataagcctcctgcc[A/G]tgactggttcagggataggccctt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) breast tumor HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TCF21_HUMAN ESR1_HUMAN MNT_HUMAN E2F1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.46 | n/a | 3.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.71 | -1.91 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | 1.66 | -0.95 | 2.20 | n/a | No Hit | |||
| E2F1_HUMAN | 2.88 | n/a | 3.00 | n/a | No Hit | |||
| ATF3_HUMAN | 2.69 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, ldl cholesterol, resistance to kuru in aged women despite likely exposure, suicide attempts in bipolar disorder, suicide attempts in bipolar disorder (substance abuse/dependence), systolic blood pressure (sbp), total cholesterol